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Genetic analysis can be a powerful tool in species conservation and management, but it has perhaps not been embraced as wholeheartedly in Australia as in other parts of the world. Its many applications in fauna management include: 1/ Clarification of taxonomic and evolutionary relationships, thus enabling separate management and conservation of evolutionarily divergent groups, and informing reintroduction/translocation planning. 2/ Identification of population structure to enable conservation management plans to be targeted at local populations. 3/ Examination of the effects of landscape modification on dispersal patterns to provide an understanding of potential threats to populations. 4/ Identification of populations, species and regions important for the conservation of evolutionary biodiversity. 5/ Detection, abundance estimation and population monitoring of rare or cryptic species via genetic analysis of field signs such as hair and faeces. In this chapter we describe and provide examples of them, and suggest ways to facilitate their increased use in Australian fauna conservation.

Alacs, E., Alpers, D., de Tores, P., Dillon, M. and Spencer, P. 2003. Identifying the presence of quokkas ( Setonix brachyurus) and other macropods using cytochrome b analyses from faeces. Wildlife Research 30: 41-47.
Allendorf, F.W., Leary, R.F., Spruell, P. and Wenburg, J.K. 2001. The problems with hybrids: Setting conservation guidelines. Trends in Ecology and Evolution 16: 613-622.
Banks, S.C., Piggott, M.P., Hansen, B.D., Robinson, N.A. and Taylor, A.C. 2002a. Wombat coprogenetics: Enumerating a common wombat population by analysis of faecal DNA. Australian Journal of Zoology 50: 193-204.
Banks, S.C., Skerratt, L.F. and Taylor, A.C. 2002b. Female dispersal and relatedness structure in the common wombat Vombatus ursinus. Journal of Zoology (London) 256: 389-399.
Banks, S.C., Hoyle, S.D., Horsup, A., Sunnucks, P. and Taylor, A.C. 2003a. Demographic monitoring of an entire species by genetic analysis of non-invasively collected material. Animal Conservation 6: 101-107.
Banks, S.C., Wilton, A.N., Horsup, A.C. and Taylor, A.C. 2003b. Genetic marker investigation of the source and impact of predation on a highly endangered species. Molecular Ecology 12: 1663-1667.
Beaumont, M.A. 1999. Detecting population expansion and decline using microsatellites. Genetics 153: 2013-2029.
Beaumont, M.A., Barratt, E.M., Gottelli, D., Kitchener, A.C., Daniels, M.J., Pritchard, J.K. and Bruford, M.W. 2001. Genetic diversity and introgression in the Scottish wildcat. Molecular Ecology 10: 319-336.
Berger, J. and Cunningham, C. 1995. Multiple bottlenecks, allopatric lineages and Badlands bison Bos bison: Consequences of lineage mixing. Biological Conservation 71: 13-23.
Bohonak, A.J. 1999. Dispersal, gene flow and population structure. Quarterly Review of Biology 74: 21-45.
Bowen, B.W. 1999. Preserving genes, species or ecosystems? Healing the fractured foundations of conservation policy. Molecular Ecology 8: S5-S10.
Brouat, C., Sennedot, F., Audiot, P., Leblois, R. and Rasplus, J.-Y. 2003. Fine-scale genetic structure of two carabid species with contrasted levels of habitat specialization. Molecular Ecology 12: 1731-1745.
Bulinski, J. and McArthur, C. 2000. Observer error in counts of macropod scats. Wildlife Research 27: 277-282.
Caughley, G. 1994. Directions in conservation biology. Journal of Animal Ecology 63: 215-244.
Clark, A.M., Bowen, B.W. and Branch, L.C. 1999. Effects of natural habitat fragmentation on an endemic scrub lizard (Sceloporus woodi): an historical perspective based on a mitochondrial DNA gene genealogy. Molecular Ecology 8: 1093-1104
Clarke, R.H., Gordon, I.R. and Clarke, F. 2001. Intraspecific phenotypic variability in the black-eared miner ( Manorina melanotis); human-facilitated introgression and the consequences for an endangered taxon. Biological Conservation 99: 145-155.
Clegg, S.M., Hale, P. and Moritz, C. 1998. Molecular population genetics of the red kangaroo ( Macropus rufus)-mtDNA variation. Molecular Ecology 7:, 679-686.
Colgan, D.J., Brown, S., Major, R.E., Christie, F., Gray, M.R. and Cassis, G. 2002. Population genetics of wolf spiders of fragmented habitat in the wheat belt of New South Wales. Molecular Ecology 11: 2295-2305.
Cooper, S.J.B., Adams, M., and Labrinidis, A. 2000. Phylogeography of the Australian dunnart Sminthopsis crassicaudata (Marsupialia: Dasyuridae). Australian Journal of Zoology 48: 461-473.
Corbett, L. 2001 The Dingo in Australia and Asia. J.B. Books, Marleston, South Australia.
Cornuet, J.M., Piry, S., Luikart, G., Estoup, A. and Solignac, M. 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153: 1989-2000.
Crandall, K.A., Bininda-Edmonds, O.R.P., Mace, G.M. and Wayne, R.K. 2000. Considering evolutionary processes in conservation biology. Trends in Ecology and Evolution 15: 290-295.
Crowther, M.S. 2002. Distributions of species of the Antechinus stuartii-A, flavipes complex as predicted by bioclimatic modelling. Australian Journal of Zoology 50: 77-91.
Crozier, R.H. 1992. Genetic diversity and the agony of choice. Biological Conservation 61: 11-15.
Crozier, R.H. 1997. Preserving the information content of species: genetic diversity, phylogeny and conservation worth. Annual Review of Ecology and Systematics. 28: 243-268.
Crozier, R.H. 1999. Phylogenetic aspects of biodiversity assessment. Australian Biologist 12: 118-124.
Dickman, C.R., King, D.H., Adams, M. and Baverstock, P.R. 1988a. Electrophoretic identification of a new species of Antechinus (Marsupialia: Dasyuridae) in south-eastern Australia. Australian Journal of Zoology 36: 455-463.
Dickman, C.R., Parnaby, H.E., Crowther, M.S. and King, D.H. 1998b Antechinus agilis (Marsupialia: Dasyuridae), a new species from the A. stuartii complex in south-eastern Australia. Australian Journal of Zoology 46: 1-26.
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References

Alacs, E., Alpers, D., de Tores, P., Dillon, M. and Spencer, P. 2003. Identifying the presence of quokkas ( Setonix brachyurus) and other macropods using cytochrome b analyses from faeces. Wildlife Research 30: 41-47.
Allendorf, F.W., Leary, R.F., Spruell, P. and Wenburg, J.K. 2001. The problems with hybrids: Setting conservation guidelines. Trends in Ecology and Evolution 16: 613-622.
Banks, S.C., Piggott, M.P., Hansen, B.D., Robinson, N.A. and Taylor, A.C. 2002a. Wombat coprogenetics: Enumerating a common wombat population by analysis of faecal DNA. Australian Journal of Zoology 50: 193-204.
Banks, S.C., Skerratt, L.F. and Taylor, A.C. 2002b. Female dispersal and relatedness structure in the common wombat Vombatus ursinus. Journal of Zoology (London) 256: 389-399.
Banks, S.C., Hoyle, S.D., Horsup, A., Sunnucks, P. and Taylor, A.C. 2003a. Demographic monitoring of an entire species by genetic analysis of non-invasively collected material. Animal Conservation 6: 101-107.
Banks, S.C., Wilton, A.N., Horsup, A.C. and Taylor, A.C. 2003b. Genetic marker investigation of the source and impact of predation on a highly endangered species. Molecular Ecology 12: 1663-1667.
Beaumont, M.A. 1999. Detecting population expansion and decline using microsatellites. Genetics 153: 2013-2029.
Beaumont, M.A., Barratt, E.M., Gottelli, D., Kitchener, A.C., Daniels, M.J., Pritchard, J.K. and Bruford, M.W. 2001. Genetic diversity and introgression in the Scottish wildcat. Molecular Ecology 10: 319-336.
Berger, J. and Cunningham, C. 1995. Multiple bottlenecks, allopatric lineages and Badlands bison Bos bison: Consequences of lineage mixing. Biological Conservation 71: 13-23.
Bohonak, A.J. 1999. Dispersal, gene flow and population structure. Quarterly Review of Biology 74: 21-45.
Bowen, B.W. 1999. Preserving genes, species or ecosystems? Healing the fractured foundations of conservation policy. Molecular Ecology 8: S5-S10.
Brouat, C., Sennedot, F., Audiot, P., Leblois, R. and Rasplus, J.-Y. 2003. Fine-scale genetic structure of two carabid species with contrasted levels of habitat specialization. Molecular Ecology 12: 1731-1745.
Bulinski, J. and McArthur, C. 2000. Observer error in counts of macropod scats. Wildlife Research 27: 277-282.
Caughley, G. 1994. Directions in conservation biology. Journal of Animal Ecology 63: 215-244.
Clark, A.M., Bowen, B.W. and Branch, L.C. 1999. Effects of natural habitat fragmentation on an endemic scrub lizard (Sceloporus woodi): an historical perspective based on a mitochondrial DNA gene genealogy. Molecular Ecology 8: 1093-1104
Clarke, R.H., Gordon, I.R. and Clarke, F. 2001. Intraspecific phenotypic variability in the black-eared miner ( Manorina melanotis); human-facilitated introgression and the consequences for an endangered taxon. Biological Conservation 99: 145-155.
Clegg, S.M., Hale, P. and Moritz, C. 1998. Molecular population genetics of the red kangaroo ( Macropus rufus)-mtDNA variation. Molecular Ecology 7:, 679-686.
Colgan, D.J., Brown, S., Major, R.E., Christie, F., Gray, M.R. and Cassis, G. 2002. Population genetics of wolf spiders of fragmented habitat in the wheat belt of New South Wales. Molecular Ecology 11: 2295-2305.
Cooper, S.J.B., Adams, M., and Labrinidis, A. 2000. Phylogeography of the Australian dunnart Sminthopsis crassicaudata (Marsupialia: Dasyuridae). Australian Journal of Zoology 48: 461-473.
Corbett, L. 2001 The Dingo in Australia and Asia. J.B. Books, Marleston, South Australia.
Cornuet, J.M., Piry, S., Luikart, G., Estoup, A. and Solignac, M. 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153: 1989-2000.
Crandall, K.A., Bininda-Edmonds, O.R.P., Mace, G.M. and Wayne, R.K. 2000. Considering evolutionary processes in conservation biology. Trends in Ecology and Evolution 15: 290-295.
Crowther, M.S. 2002. Distributions of species of the Antechinus stuartii-A, flavipes complex as predicted by bioclimatic modelling. Australian Journal of Zoology 50: 77-91.
Crozier, R.H. 1992. Genetic diversity and the agony of choice. Biological Conservation 61: 11-15.
Crozier, R.H. 1997. Preserving the information content of species: genetic diversity, phylogeny and conservation worth. Annual Review of Ecology and Systematics. 28: 243-268.
Crozier, R.H. 1999. Phylogenetic aspects of biodiversity assessment. Australian Biologist 12: 118-124.
Dickman, C.R., King, D.H., Adams, M. and Baverstock, P.R. 1988a. Electrophoretic identification of a new species of Antechinus (Marsupialia: Dasyuridae) in south-eastern Australia. Australian Journal of Zoology 36: 455-463.
Dickman, C.R., Parnaby, H.E., Crowther, M.S. and King, D.H. 1998b Antechinus agilis (Marsupialia: Dasyuridae), a new species from the A. stuartii complex in south-eastern Australia. Australian Journal of Zoology 46: 1-26.
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